Stem-loop ghr-MIR166b

Accession

MI0005645

Description

Gossypium hirsutum ghr-MIR166b precursor miRNA

Literature search

20 open access papers mention ghr-MIR166b
(73 sentences)

Sequence

12892628 reads, 464590.0 reads per million, 51 experiments

ugaggGGAAUGUUGUCUGGACCGGGGAcacuuguguuucuaauccguuuucccugcaauauuguucugauuaacguggggaucuuuauauugcuuauuuuuguaauggauuaagguuguacuagugucgUCGGACCAGGCUUCAUUCCCCccaa
((.((((((((..((((((.((((.((((((.(((..(((((((((((......(((((((.(((((.((....)).)))))....)))))))..........)))))))).)))...))).)))))).)))).))))))..)))))))).)).

Structure

-  a        UU      A    G      u   -uu   -        ----uucccu       ---u     g  u 
 ug ggGGAAUG  GUCUGG CCGG GAcacu gug   ucu aauccguu          gcaauau    guucu au a
 || ||||||||  |||||| |||| |||||| |||   ||| ||||||||          |||||||    ||||| ||  
 ac CCCCUUAC  CGGACC GGCU cuguga cau   gga uuagguaa          cguuaua    uaggg ug a
a  c        UU      A    g      u   guu   a        uguuuuuauu       uuuc     g  c 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR166b-5p

• Accession: MIMAT0055287
• Description: Gossypium hirsutum ghr-miR166b-5p mature miRNA
• Sequence: 6 - GGAAUGUUGUCUGGACCGGGGA - 27
• Evidence: experimental ; unknown

Mature ghr-miR166b-3p

• Accession: MIMAT0005813
• Description: Gossypium hirsutum ghr-miR166b-3p mature miRNA
• Sequence: 130 - UCGGACCAGGCUUCAUUCCCC - 150
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751