Stem-loop ghr-MIR390a

Accession

MI0005647

Description

Gossypium hirsutum ghr-MIR390a precursor miRNA

Literature search

15 open access papers mention ghr-MIR390a
(75 sentences)

Sequence

165489 reads, 7539.0 reads per million, 51 experiments

uggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauggaugauccaucuuucaagcuuucaugcauguauguuauuugauccucauauagCGCUAUCCAUCCUGAGUUUCAucgguucuucuu
.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))))))).

Structure

u         u  u          G         C   -  u    ---caucuuu  a  uu 
 ggaagaauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc          ca gc  u
 ||||||||| || |||||||||| ||||||||| ||| || ||||          || ||   
 ucuucuugg uA UUUGAGUCCU CCUAUCGCg uau cu cuag          gu cg  c
u         c  C          A         a   a  c    uuuauuguau  a  ua 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR390a-5p

• Accession: MIMAT0005815
• Description: Gossypium hirsutum ghr-miR390a-5p mature miRNA
• Sequence: 15 - AAGCUCAGGAGGGAUAGCGCC - 35
• Evidence: not_experimental

Mature ghr-miR390a-3p

• Accession: MIMAT0055288
• Description: Gossypium hirsutum ghr-miR390a-3p mature miRNA
• Sequence: 92 - CGCUAUCCAUCCUGAGUUUCA - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751