Stem-loop ghr-MIR390b

Accession

MI0005648

Description

Gossypium hirsutum ghr-MIR390b precursor miRNA

Literature search

13 open access papers mention ghr-MIR390b
(70 sentences)

Sequence

165494 reads, 7539.0 reads per million, 51 experiments

guauggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauggaugauccaucuuucaagcuuucaugcauguauguuauuugauccucauauagCGCUAUCCAUCCUGAGUUUCAucgguucuucuugcuug
(((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))))))))))...

Structure

---   u         u  u          G         C   -  u    ---caucuuu  a  uu 
   gua ggaagaauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc          ca gc  u
   ||| ||||||||| || |||||||||| ||||||||| ||| || ||||          || ||   
   cgu ucuucuugg uA UUUGAGUCCU CCUAUCGCg uau cu cuag          gu cg  c
guu   -         c  C          A         a   a  c    uuuauuguau  a  ua 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR390b-5p

• Accession: MIMAT0005816
• Description: Gossypium hirsutum ghr-miR390b-5p mature miRNA
• Sequence: 18 - AAGCUCAGGAGGGAUAGCGCC - 38
• Evidence: not_experimental

Mature ghr-miR390b-3p

• Accession: MIMAT0055289
• Description: Gossypium hirsutum ghr-miR390b-3p mature miRNA
• Sequence: 95 - CGCUAUCCAUCCUGAGUUUCA - 115
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751