Stem-loop ghr-MIR390c

Accession

MI0005649

Description

Gossypium hirsutum ghr-MIR390c precursor miRNA

Literature search

13 open access papers mention ghr-MIR390c
(71 sentences)

Sequence

165391 reads, 7536.0 reads per million, 51 experiments

agaaucuguuAAGCUCAGGAGGGAUAGCGCCauggaugauccaucuuucaagcuuucaugcauguauguuauuugauccucauauagCGCUAUCCAUCCUGAGUUUCAucgguu
..((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))

Structure

ag    u  u          G         C   -  u    ---caucuuu  a  uu 
  aauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc          ca gc  u
  |||| || |||||||||| ||||||||| ||| || ||||          || ||   
  uugg uA UUUGAGUCCU CCUAUCGCg uau cu cuag          gu cg  c
--    c  C          A         a   a  c    uuuauuguau  a  ua 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR390c-5p

• Accession: MIMAT0005817
• Description: Gossypium hirsutum ghr-miR390c-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: not_experimental

Mature ghr-miR390c-3p

• Accession: MIMAT0055290
• Description: Gossypium hirsutum ghr-miR390c-3p mature miRNA
• Sequence: 88 - CGCUAUCCAUCCUGAGUUUCA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751