Stem-loop ghr-MIR396a

Accession

MI0005650

Description

Gossypium hirsutum ghr-MIR396a precursor miRNA

Literature search

17 open access papers mention ghr-MIR396a
(42 sentences)

Sequence

cuucguauucUUCCACAGCUUUCUUGAACUGcaauuucauguaaucagaucauucauucauucguugucguugauggugcugcauauauacgaguacguuguugcgguucaauaaagcugugggaagauacaaaca
....(((((.((((((((((((.((((((((((((((((((((..(((((((((.((.((.....))..)).)))))).)))..)))))..)))......)))))))))))).)))))))))))).))))).....

Structure

-cuuc     c            C            ------   --     au   -      c  -u  u 
     guauu UUCCACAGCUUU UUGAACUGcaau      uuc  augua  cag aucauu au  ca u
     ||||| |||||||||||| ||||||||||||      |||  |||||  ||| |||||| ||  || c
     cauag agggugucgaaa aacuuggcguug      gag  uauau  guc ugguag ug  gu g
acaaa     a            u            uugcau   ca     ac   g      u  cu  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR396a

• Accession: MIMAT0005818
• Description: Gossypium hirsutum ghr-miR396a mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751