Stem-loop ghr-MIR396a

Accession

MI0005650

Description

Gossypium hirsutum ghr-MIR396a precursor miRNA

Literature search

17 open access papers mention ghr-MIR396a
(38 sentences)

Sequence

297972 reads, 9585.0 reads per million, 51 experiments

cuucguauucUUCCACAGCUUUCUUGAACUGcaauuucauguaaucagaucauucauucauucguugucguugauggugcugcauauauacgaguacguuguugcgGUUCAAUAAAGCUGUGGGAAGAuacaaaca
....(((((.((((((((((((.((((((((((((((((((((..(((((((((.((.((.....))..)).)))))).)))..)))))..)))......)))))))))))).)))))))))))).))))).....

Structure

-cuuc     c            C            ------   --     au   -      c  -u  u 
     guauu UUCCACAGCUUU UUGAACUGcaau      uuc  augua  cag aucauu au  ca u
     ||||| |||||||||||| ||||||||||||      |||  |||||  ||| |||||| ||  || c
     cauAG AGGGUGUCGAAA AACUUGgcguug      gag  uauau  guc ugguag ug  gu g
acaaa     A            U            uugcau   ca     ac   g      u  cu  u 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR396a-5p

• Accession: MIMAT0005818
• Description: Gossypium hirsutum ghr-miR396a-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: not_experimental

Mature ghr-miR396a-3p

• Accession: MIMAT0055291
• Description: Gossypium hirsutum ghr-miR396a-3p mature miRNA
• Sequence: 107 - GUUCAAUAAAGCUGUGGGAAGA - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751