Stem-loop ghr-MIR396b

Accession

MI0005651

Description

Gossypium hirsutum ghr-MIR396b precursor miRNA

Literature search

17 open access papers mention ghr-MIR396b
(35 sentences)

Sequence

297977 reads, 9585.0 reads per million, 51 experiments

cuucguauucUUCCACAGCUUUCUUGAACUGcaauuucauguaaucagaucauucauucauucauugucguugaugguguugcauacauacgaguacguuguugcgGUUCAAUAAAGCUGUGGGAAGAuacaaac
....(((((.((((((((((((.((((((((((((((((((((..(((((((((.((.((.....))..)).)))))).)))..)))))..)))......)))))))))))).)))))))))))).)))))....

Structure

cuuc     c            C            ------   --     au   -      c  -u  u 
    guauu UUCCACAGCUUU UUGAACUGcaau      uuc  augua  cag aucauu au  ca u
    ||||| |||||||||||| ||||||||||||      |||  |||||  ||| |||||| ||  || c
    cauAG AGGGUGUCGAAA AACUUGgcguug      gag  uacau  guu ugguag ug  gu a
caaa     A            U            uugcau   ca     ac   g      u  cu  u 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR396b-5p

• Accession: MIMAT0005819
• Description: Gossypium hirsutum ghr-miR396b-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: not_experimental

Mature ghr-miR396b-3p

• Accession: MIMAT0055292
• Description: Gossypium hirsutum ghr-miR396b-3p mature miRNA
• Sequence: 107 - GUUCAAUAAAGCUGUGGGAAGA - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751