Stem-loop ppt-MIR156c

Accession

MI0005654

Description

Physcomitrella patens ppt-MIR156c precursor miRNA

Literature search

7 open access papers mention ppt-MIR156c
(14 sentences)

Sequence

2833457 reads, 121775.0 reads per million, 10 experiments

gagugggagUGACAGAAGAGAGUGAGCACAguugagcauguacgagggugacguacuugcugaaguguGCUCACUCUCUUCAUGUCACGccucuc
(((.(((.((((((((((((((((((((((.((.((((.(((((.......))))).)))).)).)))))))))))))))).)))))).))))))

Structure

   u   a      -                g  g    u     ag 
gag ggg gUGACA GAAGAGAGUGAGCACA uu agca guacg  g
||| ||| |||||| |||||||||||||||| || |||| |||||  g
cuc ucc CACUGU CUUCUCUCACUCGugu aa ucgu caugc  u
   -   G      A                g  g    u     ag 

Annotation confidence High

Genome context

Chr18: 10522192-10522286 [-]

Mature ppt-miR156c-5p

• Accession: MIMAT0004346
• Description: Physcomitrella patens ppt-miR156c-5p mature miRNA
• Sequence: 10 - UGACAGAAGAGAGUGAGCACA - 30
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR156c-3p

• Accession: MIMAT0053662
• Description: Physcomitrella patens ppt-miR156c-3p mature miRNA
• Sequence: 69 - GCUCACUCUCUUCAUGUCACG - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769