Stem-loop ppt-MIR160a

Accession

MI0005655

Description

Physcomitrella patens ppt-MIR160a precursor miRNA

Literature search

4 open access papers mention ppt-MIR160a
(11 sentences)

Sequence

ggaguggaacUGCCUGGCUCCCUGUAUGCCAccugcggggcuugccaaagugauugucgagcugcauagcuggcauccagggagccagacagaccuccu
((((.(...(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).))))).

Structure

-    u gaa   C           U      c   c g      c   a 
 ggag g   cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa g
 |||| |   ||| ||||||||||| |||||| ||| | |||||| ||| u
 ccuc c   gac gaccgagggac uacggu gau c ucgagc guu g
u    - --a   a           c      c   a g      u   a 

Annotation confidence Not enough data

Genome context

Chr15: 9258342-9258440 [+]

Mature ppt-miR160a

• Accession: MIMAT0004347
• Description: Physcomitrella patens ppt-miR160a mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769