Stem-loop ppt-MIR160a

Accession

MI0005655

Description

Physcomitrella patens ppt-MIR160a precursor miRNA

Literature search

5 open access papers mention ppt-MIR160a
(12 sentences)

Sequence

55388 reads, 2327.0 reads per million, 10 experiments

ggaguggaacUGCCUGGCUCCCUGUAUGCCAccugcggggcuugccaaagugauugucgagcugcauagcugGCAUCCAGGGAGCCAGACAGAccuccu
((((.(...(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).))))).

Structure

-    u gaa   C           U      c   c g      c   a 
 ggag g   cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa g
 |||| |   ||| ||||||||||| |||||| ||| | |||||| ||| u
 ccuc c   GAC GACCGAGGGAC UACGgu gau c ucgagc guu g
u    - --A   A           C      c   a g      u   a 

Annotation confidence High

Genome context

Chr15: 9258342-9258440 [+]

Mature ppt-miR160a-5p

• Accession: MIMAT0004347
• Description: Physcomitrella patens ppt-miR160a-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; 454 [2]

Mature ppt-miR160a-3p

• Accession: MIMAT0053663
• Description: Physcomitrella patens ppt-miR160a-3p mature miRNA
• Sequence: 73 - GCAUCCAGGGAGCCAGACAGA - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769