Stem-loop ppt-MIR160b

Accession

MI0005656

Description

Physcomitrella patens ppt-MIR160b precursor miRNA

Literature search

3 open access papers mention ppt-MIR160b
(9 sentences)

Sequence

augcuagaucCGCCUGGCUCCCUGUAUGCCAacugcgagccuugcuaaauauuuguuugccuugauucauagcuggcguucagggagucaagcagaccuugcg
..((.((.((.((.((((((((((.((((((.(((.(((.(..(.(((((....))))).)..).))).))).)))))).)))))))))).)).)).)).)).

Structure

au  u  a  C  C          U      a   c   c uu c     a 
  gc ag uc GC UGGCUCCCUG AUGCCA cug gag c  g uaaau u
  || || || || |||||||||| |||||| ||| ||| |  | |||||  
  cg uc ag cg acugagggac ugcggu gau cuu g  c guuug u
-g  u  c  a  a          u      c   a   a uu c     u 

Annotation confidence Not enough data

Genome context

Chr18: 6744966-6745068 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR160b

Mature ppt-miR160b

• Accession: MIMAT0004348
• Description: Physcomitrella patens ppt-miR160b mature miRNA
• Sequence: 11 - CGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: not_experimental

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13