Stem-loop ppt-MIR160c

Accession

MI0005657

Description

Physcomitrella patens ppt-MIR160c precursor miRNA

Literature search

4 open access papers mention ppt-MIR160c
(10 sentences)

Sequence

6471 reads, 266.0 reads per million, 10 experiments

auauuggaucCGCCUGGCUCCCUGCAUGCCAcuugcgaaucuugccaaacguuuugucgggguucauggcugGCGUGUGGGGGGUCAGACAGGccauaca
....(((.((.(.((((((((((((((((((.(((.((((((((.((((...)))).)))))))).))).)))))))))))))))))).).)))))....

Structure

auau   a  C C                  c   c        c    c 
    ugg uc G CUGGCUCCCUGCAUGCCA uug gaaucuug caaa  
    ||| || | |||||||||||||||||| ||| |||||||| |||| g
    acc GG C GACUGGGGGGUGUGCGgu ggu cuuggggc guuu  
acau   -  A A                  c   a        u    u 

Annotation confidence High

Genome context

Chr18: 6744327-6744426 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR160c

Mature ppt-miR160c-5p

• Accession: MIMAT0004349
• Description: Physcomitrella patens ppt-miR160c-5p mature miRNA
• Sequence: 11 - CGCCUGGCUCCCUGCAUGCCA - 31
• Evidence: experimental ; 454 [2]

Mature ppt-miR160c-3p

• Accession: MIMAT0053665
• Description: Physcomitrella patens ppt-miR160c-3p mature miRNA
• Sequence: 73 - GCGUGUGGGGGGUCAGACAGG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769