Stem-loop ppt-MIR160c

Accession

MI0005657

Description

Physcomitrella patens ppt-MIR160c precursor miRNA

Literature search

3 open access papers mention ppt-MIR160c
(9 sentences)

Sequence

auauuggaucCGCCUGGCUCCCUGCAUGCCAcuugcgaaucuugccaaacguuuugucgggguucauggcuggcguguggggggucagacaggccauaca
....(((.((.(.((((((((((((((((((.(((.((((((((.((((...)))).)))))))).))).)))))))))))))))))).).)))))....

Structure

auau   a  C C                  c   c        c    c 
    ugg uc G CUGGCUCCCUGCAUGCCA uug gaaucuug caaa  
    ||| || | |||||||||||||||||| ||| |||||||| |||| g
    acc gg c gacuggggggugugcggu ggu cuuggggc guuu  
acau   -  a a                  c   a        u    u 

Annotation confidence Not enough data

Genome context

Chr18: 6744327-6744426 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR160c

Mature ppt-miR160c

• Accession: MIMAT0004349
• Description: Physcomitrella patens ppt-miR160c mature miRNA
• Sequence: 11 - CGCCUGGCUCCCUGCAUGCCA - 31
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769