Stem-loop ppt-MIR160d

Accession

MI0005658

Description

Physcomitrella patens ppt-MIR160d precursor miRNA

Literature search

3 open access papers mention ppt-MIR160d
(9 sentences)

Sequence

7677 reads, 320.0 reads per million, 10 experiments

auguuggaucCGCCUGGCUCCCUGCAUGCCGccugugaaugcugugaagagacuuacuagaauucauagcugGCGUGGAGGGAGCCAAGCAGAcucugaa
...(((((((.((.(((((((((.(((((((.((((((((.((((((......)))).)).)))))))).))))))).))))))))).)).)).))))).

Structure

aug     -  C  C         G       c        g  -    ag 
   uugga uc GC UGGCUCCCU CAUGCCG cugugaau cu guga  a
   ||||| || || ||||||||| ||||||| |||||||| || ||||   
   agucu AG CG ACCGAGGGA GUGCGgu gauacuua ga cauu  g
--a     c  A  A         G       c        a  u    ca 

Annotation confidence High

Genome context

Chr21: 10139128-10139227 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR160d

Mature ppt-miR160d-5p

• Accession: MIMAT0004350
• Description: Physcomitrella patens ppt-miR160d-5p mature miRNA
• Sequence: 11 - CGCCUGGCUCCCUGCAUGCCG - 31
• Evidence: experimental ; 454 [2]

Mature ppt-miR160d-3p

• Accession: MIMAT0053666
• Description: Physcomitrella patens ppt-miR160d-3p mature miRNA
• Sequence: 73 - GCGUGGAGGGAGCCAAGCAGA - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769