Stem-loop ppt-MIR166b

Accession

MI0005659

Description

Physcomitrella patens ppt-MIR166b precursor miRNA

Literature search

3 open access papers mention ppt-MIR166b
(7 sentences)

Sequence

267213 reads, 11294.0 reads per million, 10 experiments

cuuuguugugaGGAAUGCCGCAUGGACCGAAGccaugcgcuccacaucuagacggugauuuggacgcuaugcuUCGGACCAGGCUUCAUUCCCCucagcacag
...(((((.(.((((((..((.(((.(((((((...(((.((((.(((........))).)))))))...))))))).))).))..)))))).).)))))...

Structure

cuu     u a      CC  A   A       cau   c    c   uag 
   uguug g GGAAUG  GC UGG CCGAAGc   gcg ucca auc   a
   ||||| | ||||||  || ||| |||||||   ||| |||| |||    
   acgac C CCUUAC  CG ACC GGCUucg   cgc aggu uag   c
gac     u C      UU  G   A       uau   -    u   ugg 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr17: 3693215-3693317 [-]

Mature ppt-miR166b-5p

• Accession: MIMAT0053667
• Description: Physcomitrella patens ppt-miR166b-5p mature miRNA
• Sequence: 12 - GGAAUGCCGCAUGGACCGAAG - 32
• Evidence: experimental ; unknown

Mature ppt-miR166b-3p

• Accession: MIMAT0004351
• Description: Physcomitrella patens ppt-miR166b-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769