Stem-loop ppt-MIR166a

Accession

MI0005660

Description

Physcomitrella patens ppt-MIR166a precursor miRNA

Literature search

2 open access papers mention ppt-MIR166a
(5 sentences)

Sequence

266874 reads, 11280.0 reads per million, 10 experiments

ucugcugugaGGAAUGCCCCCUGGCCCGAAGccaugugccuuuucauguccacgugggguaaacauuaaagcuUCGGACCAGGCUUCAUUCCCCucagcaca
..(((((.(.((((((...(((((.(((((((.((((((((...((((....))))))))..))))....))))))).)))))...)))))).).)))))..

Structure

uc     u a      CCC     C       ---c    --    uuu    u 
  ugcug g GGAAUG   CCUGG CCGAAGc    augu  gccu   caug c
  ||||| | ||||||   ||||| |||||||    ||||  ||||   ||||  
  acgac C CCUUAC   GGACC GGCUucg    uaca  uggg   gugc c
ac     u C      UUC     A       aaau    aa    ---    a 

Annotation confidence High

Genome context

Chr02: 9952562-9952663 [-]

Mature ppt-miR166a-5p

• Accession: MIMAT0053668
• Description: Physcomitrella patens ppt-miR166a-5p mature miRNA
• Sequence: 11 - GGAAUGCCCCCUGGCCCGAAG - 31
• Evidence: experimental ; unknown

Mature ppt-miR166a-3p

• Accession: MIMAT0004352
• Description: Physcomitrella patens ppt-miR166a-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769