Stem-loop ppt-MIR319e

Accession

MI0005665

Description

Physcomitrella patens ppt-MIR319e precursor miRNA

Literature search

3 open access papers mention ppt-MIR319e
(14 sentences)

Sequence

27589 reads, 1195.0 reads per million, 10 experiments

cuagccguggGAGCUCCUUCCGGUUCAAUAGUggcugaugugagguugcacugcugccgauucaaacuuccggcuucccuuucuuaacacgacagggaauccgaaugucugaugcgggagcugugcggucuucaacuuuagcgccuCUUGGACUGAAGGGAGCUCCCaagucuu
..((.(.((((((((((((.((((((((.((..(((((.((((((((((((.(((.(((..(((.((...(((.((((((.((.......)).)))))).)))...)).)))..))).))).)))))).)))).)).)))))..)).)))))))).)))))))))))).).)).

Structure

cu  c g            C        U  Ug     u  -    -      u   g   au   a  uuc   c      u  uu 
  ag c uggGAGCUCCUU CGGUUCAA AG  gcuga gu gagg uugcac gcu ccg  uca ac   cgg uucccu uc  a
  || | |||||||||||| |||||||| ||  ||||| || |||| |||||| ||| |||  ||| ||   ||| |||||| ||  a
  uc g aCCCUCGAGGGA GUCAGGUU uc  cgauu ca cuuc ggcgug cga ggc  agu ug   gcc aaggga ag  c
-u  u a            A        C  cg     u  a    u      u   g   gu   c  uaa   u      c  ca 

Annotation confidence High

Genome context

Chr15: 7525796-7525969 [-]

Mature ppt-miR319e-5p

• Accession: MIMAT0053669
• Description: Physcomitrella patens ppt-miR319e-5p mature miRNA
• Sequence: 11 - GAGCUCCUUCCGGUUCAAUAGU - 32
• Evidence: experimental ; unknown

Mature ppt-miR319e-3p

• Accession: MIMAT0004354
• Description: Physcomitrella patens ppt-miR319e-3p mature miRNA
• Sequence: 147 - CUUGGACUGAAGGGAGCUCCC - 167
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769