Stem-loop ppt-MIR395

Accession

MI0005667

Description

Physcomitrella patens ppt-MIR395 precursor miRNA

Literature search

1 open access papers mention ppt-MIR395
(1 sentences)

Sequence

aauuuugaaaccuucuuuugcuucauauucuagucguugguuuauggugccuaagaaaaauggaucguuauguuuuauucaagauauacagccaaugaauguaguaacuauaagaaaugcagguauaggaucuuuaauagaugaguuugCUGAAGCGUUUGGGGGAAGGgcaauuuau
..........(((((((((((((((........(((((((((.(((((.((..........)))))))((((((((....)))))))).))))))))).(((((...)))))......(((((......((((.....))))...))))))))))))....)))))))).........

Structure

aauuuugaaa        ----       uauucuagucguugguuuauggugccuaagaaaaauggaucguuauguuuuauucaagauauacagccaaugaauguaguaacuauaagaaau     uauagg    u 
          ccuucuuu    ugcuuca                                                                                             gcagg      aucu u
          ||||||||    |||||||                                                                                             |||||      |||| a
          GGAAGGGG    GCGAAGU                                                                                             Cguuu      uaga a
-uauuuaacg        GUUU       ---------------------------------------------------------------------------------------------     ---gag    u 

Annotation confidence Not enough data

Comments

The mature miRNA sequence reported in [1] has a 1-nt insertion with respect to the genome assembly sequence shown here.

Genome context

Chr12: 8343462-8343639 [+]

Mature ppt-miR395

• Accession: MIMAT0004355
• Description: Physcomitrella patens ppt-miR395 mature miRNA
• Sequence: 150 - CUGAAGCGUUUGGGGGAAGG - 169
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13