Stem-loop ppt-MIR408a

Accession

MI0005668

Description

Physcomitrella patens ppt-MIR408a precursor miRNA

Literature search

1 open access papers mention ppt-MIR408a
(4 sentences)

Sequence

acaaccagcaCUGCACUGCAUCUUCCCUGUGCcaucuucgucgauugucucguaccgaaagugauucaaccacagcgagaucagacucaacuguuaaagcugaugacacugauacgagaugaugaagacauaggcagggcagccagug
........(((((..((((.(((..((((((...((((((((....((((((((.....((((..(((....((((.....(((......))).....)))).)))))))..)))))))))))))))))))))).))))))).)))))

Structure

acaaccag     CA    A   UC      Cca        gauu        ccgaa    au   acca    gagau   ac 
        caCUG  CUGC UCU  CCUGUG   ucuucguc    gucucgua     agug  uca    cagc     cag  u
        |||||  |||| |||  ||||||   ||||||||    ||||||||     ||||  |||    ||||     |||   
        gugac  gacg gga  ggauac   agaaguag    uagagcau     ucac  agu    gucg     guc  c
--------     -c    -   -c      ---        ----        ---ag    --   ---a    aaauu   aa 

Annotation confidence Not enough data

Genome context

Chr03: 17195194-17195341 [+]

Mature ppt-miR408a

• Accession: MIMAT0004356
• Description: Physcomitrella patens ppt-miR408a mature miRNA
• Sequence: 11 - CUGCACUGCAUCUUCCCUGUGC - 32
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13