Stem-loop ppt-MIR477f

Accession

MI0005673

Description

Physcomitrella patens ppt-MIR477f precursor miRNA

Literature search

1 open access papers mention ppt-MIR477f
(10 sentences)

Sequence

42438 reads, 1972.0 reads per million, 10 experiments

guguuuguuuuucUCCCUCAAAGGCUUCCAACAAcaggaggguacaauuccauugugguuauaacccauaguugagguguuuuugcucucucugcuGUCGGAAGCCUUCGAGGGAGAUgaaagaauu
..((((.(((.((((((((.(((((((((.(((.((((((((((((.(((.(((((((.......))))))).))).)))....)))))).))).))).))))))))).)))))))).))).)))).

Structure

gu    g   u        A         A   A   -      ----   a   c       uu 
  guuu uuu ucUCCCUC AAGGCUUCC ACA cag gagggu    aca uuc auugugg  a
  |||| ||| |||||||| ||||||||| ||| ||| ||||||    ||| ||| |||||||  u
  uaag aag AGAGGGAG UUCCGAAGG UGu guc cucucg    ugu gag ugauacc  a
-u    a   U        C         C   c   u      uuuu   g   u       ca 

Annotation confidence High

Comments

This sequence was named miR477a in [1]. The miR477 family contains miRNAs previously called miR473, miR1210 and miR1213 here. The names and sequences are rationalised in [2]. The mature sequence shown here is the most abundant clone by deep-sequencing [2].

Genome context

Chr19: 4222086-4222212 [-]

Mature ppt-miR477f-5p

• Accession: MIMAT0004361
• Description: Physcomitrella patens ppt-miR477f-5p mature miRNA
• Sequence: 14 - UCCCUCAAAGGCUUCCAACAA - 34
• Evidence: experimental ; Northern [1], 454 [2], cloned [2]

Mature ppt-miR477f-3p

• Accession: MIMAT0053671
• Description: Physcomitrella patens ppt-miR477f-3p mature miRNA
• Sequence: 97 - GUCGGAAGCCUUCGAGGGAGAU - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769