Stem-loop ppt-MIR894

Accession

MI0005677

Description

Physcomitrella patens ppt-MIR894 precursor miRNA

Literature search

1 open access papers mention ppt-MIR894
(2 sentences)

Sequence

74450 reads, 3311.0 reads per million, 10 experiments

cauaauucaaauaauccaaaaaaaauaaaccaaauaccuuccaccucaagCGUUUCACGUCGGGUUCACCAaauauguuguauuaugugaaguuuugauugagaaugcaccgagcacuUGGCUAUGGAAGGUAAAAgaaaauugcaacaaaaaguccuaacaauccaauaggauuauagaaaauuuauaauuaaacguuaacaaucauaaucaaacaaua
..................................(((((((((......((((((((.(((((((((((..(((((...)))))..)))))..)))))))))).)))).((((....))))...)))))))))...................(((((((.........))))))).............................................

Structure

-----------------------------------------------------cauaauucaaauaauccaaaaaaaauaaaccaaa         ----------ccucaa    -    C      --     CA     g 
                                                                                       uaccuucca                gCGU UUCA GUCGGG  UUCAC  aauau  
                                                                                       |||||||||                |||| |||| ||||||  |||||  ||||| u
                                                                                       AUGGAAGGU                cgua gagu uaguuu  aagug  uuaug  
auaacaaacuaauacuaacaauugcaaauuaauauuuaaaagauauuaggauaaccuaacaauccugaaaaacaacguuaaaagAAA         AUCGGUucacgagcca    a    -      ug     ua     u 

Annotation confidence Low

Genome context

Chr23: 5591026-5591245 [+]

Mature ppt-miR894-5p

• Accession: MIMAT0004365
• Description: Physcomitrella patens ppt-miR894-5p mature miRNA
• Sequence: 51 - CGUUUCACGUCGGGUUCACCA - 71
• Evidence: experimental ; cloned [1]

Mature ppt-miR894-3p

• Accession: MIMAT0053673
• Description: Physcomitrella patens ppt-miR894-3p mature miRNA
• Sequence: 119 - UGGCUAUGGAAGGUAAAA - 136
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13