Stem-loop ppt-MIR895

Accession

MI0005678

Description

Physcomitrella patens ppt-MIR895 precursor miRNA

Sequence

gauucauguaauuauuguuaaccucuuuguguuccgagcuuuuaugauugGUAGCUUAGCGAGGUGUUGGUAugauaccaaucccugguuugcuuguuccuaauugaguuaugcuugcacucaaaucuaggggagcgguauuuuggcucacucgcaaugcuuucauguacccuucccgcauuaugagugccacuuggcuccauggugugauauauaaguuuc
((((.(((((...............((((.((..(((((......((((((.(((..(((.(((.(((((((...))))))).))).))).....))).)))))).......))))).)).))))....((((((.(((((...(((...........))).....)))))))))))((((((((.(.(((....))).)))))))))..))))).))))..

Structure

--    c     ----------------------------------------------------------------------auuauuguuaaccuc    u  uc     -uuuuau      U   ---UU   G   U       u 
  gauu augua                                                                                     uuug gu  cgagc       gauugG AGC     AGC AGG GUUGGUA  
  |||| |||||                                                                                     |||| ||  |||||       |||||| |||     ||| ||| ||||||| g
  uuga uauau                                                                                     aaac ca  guucg       uuaauc uug     uug ucc uaaccau  
cu    a     agugugguaccucgguucaccgugaguauuacgcccuucccauguacuuucguaacgcucacucgguuuuauggcgaggggaucu    u  -c     uauugag      c   uucgu   g   c       a 

Annotation confidence Not enough data

Genome context

Chr19: 13745220-13745441 [-]

Mature ppt-miR895

• Accession: MIMAT0004366
• Description: Physcomitrella patens ppt-miR895 mature miRNA
• Sequence: 51 - GUAGCUUAGCGAGGUGUUGGUA - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13