Stem-loop ppt-MIR899

Accession

MI0005682

Description

Physcomitrella patens ppt-MIR899 precursor miRNA

Sequence

acggcguuuuucucggagaaaaauaccauccuuugguucaacaacgguugcugcguuuuccacguucggauacaacccugcccaguugcugugagagauugacgagugcaagaagacccucuuuccauguuccagacgcaggccuucgccgAACUGAGAUACAUCGCAAUCGacacaccggccgcuucagaaucagugacuagcauacccagcugcuauugg
.((((((((((((...))))))))((((.....)))).......(((((((.(.((..((((.((((((.......(((((......((((.((((((.....(.((........)).))))))))).)).......)))))......)))))))).)).)).).)))))))........)))).........(((((..((((.......)))).))))).

Structure

-------------------------------------a    guuuuucucggagaaaaauaccauccuuugguucaacaa       u c  uu  -  c      auacaac     -ccaguu  -  u      uugac a  gca 
                                      cggc                                       cgguugc g gu  uc ca guucgg       ccugc       gc ug gagaga     g gu   a
                                      ||||                                       ||||||| | ||  || || ||||||       |||||       || || ||||||     | ||    
                                      gccg                                       GCUAACG U CA  AG GU CAAgcc       ggacg       ug ac cuuucu     c ca   g
gguuaucgucgacccauacgaucagugacuaagacuuc    -------------------------------gccacaca       C A  -U  A  -      -gcuucc     cagaccu  u  -      ----- c  gaa 

Annotation confidence Not enough data

Genome context

Chr13: 11433352-11433573 [+]

Mature ppt-miR899

• Accession: MIMAT0004369
• Description: Physcomitrella patens ppt-miR899 mature miRNA
• Sequence: 152 - AACUGAGAUACAUCGCAAUCG - 172
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13