Accession
MI0005683
Description
Physcomitrella patens
ppt-MIR900 precursor miRNA
Sequence
145171
reads,
6062.0
reads per million, 10 experiments
gaguaagauagagcaaaacgcagccaaagaagagucguccaguagccgacguagauggcaugcaacuccaacuucgcaaugauacccgcucuaagaucgcggucuucCCAGGUACAAGAACACAGCUCaccaguagucgaccgcuggugagcuguguUCUUGUACCUGGGAAGACCaccagcgaagagaauagaauagaauuggcgaguuggaauccgaa
...................(((((((.......((((.(.....).)))).....)))).)))...((((((((..((((..((....((((....((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))))....)))))))).......))..))))..)))))))).......
...................(((((((.......((((.(.....).)))).....)))).)))...((((((((..((((..((....((((....((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))))....)))))))).......))..))))..)))))))).......
Structure
gaguaagauagagcaaaacgcagccaaagaagagucguccaguagccgacguagauggcaugcaac cg ga ---cccg aaga ---- agu
uccaacuu caau ua cucu ucgc ggucuucCCAGGUACAAGAACACAGCUCaccagu c
|||||||| |||| || |||| |||| ||||||||||||||||||||||||||||||||||
agguugag guua au gaga agcg CCAGAAGGGUCCAUGUUCUugugucgaguggucg g
-----------------------------------------------------------aagccua cg ag aagauaa ---- acca cca
Annotation confidence
Low
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Genome context
Chr13: 11882003-11882222 [+]
Database links
Mature ppt-miR900-5p
| Accession | MIMAT0004961 |
| Description | Physcomitrella patens ppt-miR900-5p mature miRNA |
| Sequence | 108 - CCAGGUACAAGAACACAGCUC - 128 |
| Evidence |
experimental
454 [2] |
Mature ppt-miR900-3p
| Accession | MIMAT0004370 |
| Description | Physcomitrella patens ppt-miR900-3p mature miRNA |
| Sequence | 158 - UCUUGUACCUGGGAAGACC - 176 |
| Evidence |
experimental
cloned [1], 454 [2] |
References
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