Stem-loop ppt-MIR900

Accession

MI0005683

Description

Physcomitrella patens ppt-MIR900 precursor miRNA

Sequence

gaguaagauagagcaaaacgcagccaaagaagagucguccaguagccgacguagauggcaugcaacuccaacuucgcaaugauacccgcucuaagaucgcggucuUCCCAGGUACAAGAACACAGCucaccaguagucgaccgcuggugagcUGUGUUCUUGUACCUGGGAAGaccaccagcgaagagaauagaauagaauuggcgaguuggaauccgaa
...................(((((((.......((((.(.....).)))).....)))).)))...((((((((..((((..((....((((....((((((((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))))....)))))))).......))..))))..)))))))).......

Structure

gaguaagauagagcaaaacgcagccaaagaagagucguccaguagccgacguagauggcaugcaac        cg    ga  ---cccg    aaga    ----                                  agu 
                                                                  uccaacuu  caau  ua       cucu    ucgc    ggucuUCCCAGGUACAAGAACACAGCucaccagu   c
                                                                  ||||||||  ||||  ||       ||||    ||||    ||||||||||||||||||||||||||||||||||    
                                                                  agguugag  guua  au       gaga    agcg    ccaGAAGGGUCCAUGUUCUUGUGUcgaguggucg   g
-----------------------------------------------------------aagccua        cg    ag  aagauaa    ----    acca                                  cca 

Annotation confidence Not enough data

Genome context

Chr13: 11882003-11882222 [+]

Mature ppt-miR900-5p

• Accession: MIMAT0004961
• Description: Physcomitrella patens ppt-miR900-5p mature miRNA
• Sequence: 106 - UCCCAGGUACAAGAACACAGC - 126
• Evidence: experimental ; 454 [2]

Mature ppt-miR900-3p

• Accession: MIMAT0004370
• Description: Physcomitrella patens ppt-miR900-3p mature miRNA
• Sequence: 153 - UGUGUUCUUGUACCUGGGAAG - 173
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769