Stem-loop ppt-MIR902b

Accession

MI0005686

Description

Physcomitrella patens ppt-MIR902b precursor miRNA

Literature search

2 open access papers mention ppt-MIR902b
(2 sentences)

Sequence

gguugugauaaaucgguuccgugucgucauaaucgcaaguguugcaggcaguuaugaggagauggagagcgugcagacuuguuuccuuccucuagccUAUGAUGCAGAUUCUUCAUCUguuuguuaucguucucaugguguacauaacagACGAAGGUCUGCAUCAUAGCcaagaggaagcaaaucuuaauaccuggcucgaauuuggccugcacgcaauuuu
((((......))))..((((((.((.(((((((.((..((...))..)).))))))).)).)))))).(((((((.....((((.((((((((.(.(((((((((((((.((((.(((((((((((((((....)))))).))).)))))).))))))))))))))))).).)))))))).))))..........((((.......)))))))))))......

Structure

gguugugauaaaucgguuccgugucgucauaaucgcaaguguugcaggcaguuaugaggagauggaga       --------------------gacuu    c        a c             U    A      -   -      u 
                                                                    gcgugca                         guuu cuuccucu g cUAUGAUGCAGAU CUUC UCUguu ugu uaucgu c
                                                                    |||||||                         |||| |||||||| | ||||||||||||| |||| |||||| ||| ||||||  
                                                                    cgcacgu                         uaaa gaaggaga c GAUACUACGUCUG GAAG Agacaa aca guggua u
--------------------------------------------------------------uuuuaa       ccgguuuaagcucgguccauaauuc    c        a C             -    C      u   u      c 

Annotation confidence Not enough data

Genome context

Chr07: 11978379-11978601 [+]

Mature ppt-miR902b-5p

• Accession: MIMAT0004963
• Description: Physcomitrella patens ppt-miR902b-5p mature miRNA
• Sequence: 98 - UAUGAUGCAGAUUCUUCAUCU - 118
• Evidence: experimental ; 454 [2]

Mature ppt-miR902b-3p

• Accession: MIMAT0004373
• Description: Physcomitrella patens ppt-miR902b-3p mature miRNA
• Sequence: 151 - ACGAAGGUCUGCAUCAUAGC - 170
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769