Stem-loop ppt-MIR536c

Accession

MI0005687

Description

Physcomitrella patens ppt-MIR536c precursor miRNA

Literature search

2 open access papers mention ppt-MIR536c
(16 sentences)

Sequence

uuguucgaccauugcaguugcuuuuagacgccaaugcuuggcaugaaugucuugagugucugguagccuaaaacagagagaugaugcaauugguauguggaucuucucugguuuuagaggaaucguucgcuggccuccagguucgagacaAUCGUGCCAAGCUUUGUGCUUUcaagagccuuaaugguuuuggacgauggguucuacuggaucucuaacauc
((((((((((((((.((..((((((.((.(((((.(((((((((((.(((((((((..(((((..(((((((((..(((((.(((.((.........)).))).))))).))))))(((......)))...)))..)))))))))))))).))))))))))).))).)).)).))))))))))))))))..)))))).((((((....))))))........

Structure

-------------------------      --        c  uu      a  c  -   u           a         ug     ua   ---------------      ag     u   g  auu 
                         uuguuc  gaccauug ag  gcuuuu ga gc caa gcuuggcauga ugucuugag  ucugg  gcc               uaaaac  agaga gau ca   g
                         ||||||  |||||||| ||  |||||| || || ||| ||||||||||| |||||||||  |||||  |||               ||||||  ||||| ||| ||   g
                         agcagg  uugguaau uc  cgagaa UU CG GUU CGAACCGUGCU acagagcuu  ggacc  cgg               auuuug  ucucu cua gu   u
cuacaaucucuaggucaucuugggu      uu        -  --      c  U  U   U           A         --     uc   ucgcuugcuaaggag      -g     u   g  gua 

Annotation confidence Not enough data

Genome context

Chr03: 12087772-12087993 [-]

Mature ppt-miR536c

• Accession: MIMAT0004374
• Description: Physcomitrella patens ppt-miR536c mature miRNA
• Sequence: 151 - AUCGUGCCAAGCUUUGUGCUUU - 172
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769