Accession
MI0005687
Description
Physcomitrella patens
ppt-MIR536c precursor miRNA
Literature search
2 open access papers mention ppt-MIR536c
(16 sentences)
(16 sentences)
Sequence
6481
reads,
284.0
reads per million, 10 experiments
uuguucgaccauugcaguugcuuuuagacgccaaugcUUGGCAUGAAUGUCUUGAGUGUCUgguagccuaaaacagagagaugaugcaauugguauguggaucuucucugguuuuagaggaaucguucgcuggccuccagguucgagacaAUCGUGCCAAGCUUUGUGCUUUcaagagccuuaaugguuuuggacgauggguucuacuggaucucuaacauc
((((((((((((((.((..((((((.((.(((((.(((((((((((.(((((((((..(((((..(((((((((..(((((.(((.((.........)).))).))))).))))))(((......)))...)))..)))))))))))))).))))))))))).))).)).)).))))))))))))))))..)))))).((((((....))))))........
((((((((((((((.((..((((((.((.(((((.(((((((((((.(((((((((..(((((..(((((((((..(((((.(((.((.........)).))).))))).))))))(((......)))...)))..)))))))))))))).))))))))))).))).)).)).))))))))))))))))..)))))).((((((....))))))........
Structure
------------------------- -- c uu a c - u A UG ua --------------- ag u g auu
uuguuc gaccauug ag gcuuuu ga gc caa gcUUGGCAUGA UGUCUUGAG UCUgg gcc uaaaac agaga gau ca g
|||||| |||||||| || |||||| || || ||| ||||||||||| ||||||||| ||||| ||| |||||| ||||| ||| || g
agcagg uugguaau uc cgagaa UU CG GUU CGAACCGUGCU acagagcuu ggacc cgg auuuug ucucu cua gu u
cuacaaucucuaggucaucuugggu uu - -- c U U U A -- uc ucgcuugcuaaggag -g u g gua
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
Chr03: 12087772-12087993 [-]
Database links
Mature ppt-miR536c-5p
| Accession | MIMAT0053676 |
| Description | Physcomitrella patens ppt-miR536c-5p mature miRNA |
| Sequence | 38 - UUGGCAUGAAUGUCUUGAGUGUCU - 61 |
| Evidence |
experimental
unknown |
Mature ppt-miR536c-3p
| Accession | MIMAT0004374 |
| Description | Physcomitrella patens ppt-miR536c-3p mature miRNA |
| Sequence | 151 - AUCGUGCCAAGCUUUGUGCUUU - 172 |
| Evidence |
experimental
cloned [1], 454 [2] |
References
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