Stem-loop ppt-MIR171a

Accession

MI0005688

Description

Physcomitrella patens ppt-MIR171a precursor miRNA

Literature search

2 open access papers mention ppt-MIR171a
(2 sentences)

Sequence

5575 reads, 231.0 reads per million, 10 experiments

aggcaugUGAUAUUGGUGGCGCUCAAUCagaugaccaugccugugaugcuggcguugccaucagauUGAGCCGCGCCAAUAUCACAUccuu
(((.((((((((((((((..((((((((.((((.(.(((((.((...)).))))).).)))).))))))))..))))))))))))))))).

Structure

-   c              GC        a    a c     u  g 
 agg augUGAUAUUGGUG  GCUCAAUC gaug c augcc gu  
 ||| ||||||||||||||  |||||||| |||| | ||||| || a
 ucc UACACUAUAACCGC  CGAGUuag cuac g ugcgg cg  
u   -              GC        a    c u     u  u 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr22: 9196827-9196917 [-]

Mature ppt-miR171a-5p

• Accession: MIMAT0053677
• Description: Physcomitrella patens ppt-miR171a-5p mature miRNA
• Sequence: 8 - UGAUAUUGGUGGCGCUCAAUC - 28
• Evidence: experimental ; unknown

Mature ppt-miR171a-3p

• Accession: MIMAT0004375
• Description: Physcomitrella patens ppt-miR171a-3p mature miRNA
• Sequence: 67 - UGAGCCGCGCCAAUAUCACAU - 87
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769