Stem-loop ppt-MIR171b

Accession

MI0005689

Description

Physcomitrella patens ppt-MIR171b precursor miRNA

Literature search

1 open access papers mention ppt-MIR171b
(1 sentences)

Sequence

1029 reads, 45.0 reads per million, 10 experiments

aggcauguguuauugggcccgcucaaucagaugucuuuuccagcaacggcugguauuguccucagauUGAGCCGCGCCAAUAUCACAUccuu
(((.(((((.((((((((..((((((((.((.(.(....(((((....)))))....).).)).)))))))).)).)))))).)))))))).

Structure

-   c     u      -  cc        a  u u uuuu     a 
 agg augug uauugg gc  gcucaauc ga g c    ccagc a
 ||| ||||| |||||| ||  |||||||| || | |    |||||  
 ucc UACAC AUAACC CG  CGAGUuag cu c g    ggucg c
u   -     U      G  -C        a  c u uuau     g 

Annotation confidence Not enough data

Genome context

Chr18: 5847812-5847903 [-]

Mature ppt-miR171b-3p

• Accession: MIMAT0004376
• Description: Physcomitrella patens ppt-miR171b-3p mature miRNA
• Sequence: 68 - UGAGCCGCGCCAAUAUCACAU - 88
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13