Stem-loop ppt-MIR903

Accession

MI0005690

Description

Physcomitrella patens ppt-MIR903 precursor miRNA

Sequence

841414 reads, 37511.0 reads per million, 10 experiments

gaacggcuucggcuggucugccgcucaacgcggggcacuggucagcguggGCUACUUCGGCGGGACAAGAGCaggauguaguuuccugccccccaugccgccgagguggccgaggaacgaagcgugcggccCCCUCUCGGGGGGGUCGUGGgacucgucccaacugcacgcucgggacgcuggcguauugagcucuucauccgacccgucuu
..((((..((((.(((......(((((((((.(((..(((...((((((((((((((((((((.(...(.((((((.......)))))).)....).))))))))))))))..((.((((..(.(((((((((((....))))))))))).)..)))).)).....)))))))))..).)).))))..)))))...))).)))).))))...

Structure

-ga    cu    c   ucugcc     --    g  - ca   guc      -------------------------------------------------------              G -CAA A      ug 
   acgg  ucgg ugg      gcuca  acgc gg g  cug   agcgug                                                       gGCUACUUCGGCGG A    G GCagga  u
   ||||  |||| |||      |||||  |||| || |  |||   ||||||                                                       |||||||||||||| |    | ||||||  a
   ugcc  agcc acu      cgagu  ugcg uc c  ggc   ucgcac                                                       ccgguggagccgcc u    c cguccu  g
uuc    -c    u   ---ucu     ua    g  g ag   ---      gucaacccugcucagGGUGCUGGGGGGGCUCUCCCccggcgugcgaagcaaggag              g accc c      uu 

Annotation confidence Low

Genome context

Chr20: 1741-1952 [-]

Mature ppt-miR903-5p

• Accession: MIMAT0004377
• Description: Physcomitrella patens ppt-miR903-5p mature miRNA
• Sequence: 51 - GCUACUUCGGCGGGACAAGAGC - 72
• Evidence: experimental ; cloned [1]

Mature ppt-miR903-3p

• Accession: MIMAT0053678
• Description: Physcomitrella patens ppt-miR903-3p mature miRNA
• Sequence: 132 - CCCUCUCGGGGGGGUCGUGG - 151
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13