Stem-loop ppt-MIR536b

Accession

MI0005691

Description

Physcomitrella patens ppt-MIR536b precursor miRNA

Literature search

2 open access papers mention ppt-MIR536b
(16 sentences)

Sequence

gucggcaguuuucguauuucgccgacuucggugacugcagaaagucgaaacaguagagagccuguugaauugcagcgguagacuugucuggcaucauuugguagucgucaaacuuauucuccccgaguuguagcggaaugauaccagaaaUUCGUGCCAAGCUGUGUGCAACcaagggguuuguuacuuaagauccacaugggaggagcgucccuaccagca
.(((((...(((((((..((((((....)))))).))).)))))))))...(((((.((((((.(((...((((((((((......(((((.(((((((.(((.(((................))).)....)).))))))).)))))......))))..))))))......))).)))))).)))))...........(((.(((......))).)))...

Structure

gucggcaguuuucguauuucgccgacuucggugacugcagaaagucgaaac     a      g   ---aau      --    gacuug     c       g  ---- g   ucaaacu 
                                                   aguag gagccu uug      ugcagc  ggua      ucugg aucauuu gu    a ucg       u
                                                   ||||| |||||| |||      ||||||  ||||      ||||| ||||||| ||    | |||        
                                                   ucauu uuuggg aac      GUGUCG  CCGU      agacc uaguaag cg    u agc       a
-----------------acgaccaucccugcgaggaggguacaccuagaau     g      g   CAACGU      AA    GCUUaa     a       g  augu g   cccucuu 

Annotation confidence Not enough data

Genome context

Chr23: 2550169-2550390 [-]

Mature ppt-miR536b

• Accession: MIMAT0004378
• Description: Physcomitrella patens ppt-miR536b mature miRNA
• Sequence: 151 - UUCGUGCCAAGCUGUGUGCAAC - 172
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769