Stem-loop ppt-MIR904a

Accession

MI0005692

Description

Physcomitrella patens ppt-MIR904a precursor miRNA

Literature search

2 open access papers mention ppt-MIR904a
(4 sentences)

Sequence

268747 reads, 12533.0 reads per million, 10 experiments

uguuggaguuccuucggugugguguugcaauauuugugaugcuaauauggUCUUGUCAAUGUUUAGGGGCAaaggccugauuaugcagaugcuugguguaagcuuaugcuuguacaacuuuugcuauuggccuccaCCCCUAAAUCUUGGCAAGACCUaauuagcccacaacauugaauugaccgggaccggcgacuaaucaguacgagcucaagcagga
((((.(((((((.(((((.((((....((((..(((((..((((((..(((((((((((.(((((((((...(((((.(((...(((((......((((((((....))))))))....))))).))))))))...))))))))).)))))))))))..)))))).))))).)))).....))))..))))).)(((....)))..)))))).))))...

Structure

---    g      ------------ u     -g    -guug    au     au      au           U         CAa     u   uau     ugcuug        u 
   uguu gaguuc            c ucggu  uggu     caau  uugug  gcuaau  ggUCUUGUCAA GUUUAGGGG   aggcc gau   gcaga      guguaagc u
   |||| ||||||            | |||||  ||||     ||||  |||||  ||||||  ||||||||||| |||||||||   ||||| |||   |||||      ||||||||  
   acga cucgag            g ggcca  gcca     guua  aacac  cgauua  CCAGAACGGUU UAAAUCCCC   uccgg uua   cguuu      cauguucg a
agg    a      caugacuaauca c     gg    guuaa    -c     -c      aU           C         acc     -   --u     --ucaa        u 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr19: 4384251-4384470 [-]

Mature ppt-miR904a-5p

• Accession: MIMAT0004379
• Description: Physcomitrella patens ppt-miR904a-5p mature miRNA
• Sequence: 51 - UCUUGUCAAUGUUUAGGGGCA - 71
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR904a-3p

• Accession: MIMAT0053679
• Description: Physcomitrella patens ppt-miR904a-3p mature miRNA
• Sequence: 137 - CCCCUAAAUCUUGGCAAGACCU - 158
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769