Accession
MI0005693
Description
Physcomitrella patens
ppt-MIR904b precursor miRNA
Literature search
2 open access papers mention ppt-MIR904b
(4 sentences)
(4 sentences)
Sequence
cuuuggagcgaugugugucaugauggcgguauuuugugaugcuaauacggUCUUGUCAAUGUUUAGGGGCAaaggugcaacuaugcaacaucccuggugcgagcucuugaucgcguaaguguugcuagugcccuccaccccuaaauguuggcaagaccuaauuggcgcacaacauugggaccgacgcuggaucagcagaagucaaaagacacaauuguga
.......(((((.((((((.((((..((((((.(((((.(((((((..(((((((((((((((((((((...(((.(((.(((.((((((...((..(((((........)))))..)))))))))))))))))...)))))))))))))))))))))..)))))))))))).))....))))..((((...))))....))))...)))))))))))..
.......(((((.((((((.((((..((((((.(((((.(((((((..(((((((((((((((((((((...(((.(((.(((.((((((...((..(((((........)))))..)))))))))))))))))...)))))))))))))))))))))..)))))))))))).))....))))..((((...))))....))))...)))))))))))..
Structure
cuuugga g --a ---------------gg ---- u a ac CAa u a u ucc gg gcu
gcgau uguguc ugau cggu au uugug ugcuaau ggUCUUGUCAAUGUUUAGGGG agg gca cua gcaaca cu ugcga c
||||| |||||| |||| |||| || ||||| ||||||| ||||||||||||||||||||| ||| ||| ||| |||||| || |||||
uguua acacag acug gcca ua aacac gcgguua ccagaacgguuguaaaucccc ucc cgu gau cguugu ga gcgcu u
-----ag - aaa aagacgacuaggucgca gggu c - au acc - - - --- au agu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
Chr22: 2033169-2033388 [+]
Database links
Mature ppt-miR904b
| Accession | MIMAT0004380 |
| Description | Physcomitrella patens ppt-miR904b mature miRNA |
| Sequence | 51 - UCUUGUCAAUGUUUAGGGGCA - 71 |
| Evidence |
experimental
cloned [1], 454 [2] |
References
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