Stem-loop ppt-MIR904b

Accession

MI0005693

Description

Physcomitrella patens ppt-MIR904b precursor miRNA

Literature search

2 open access papers mention ppt-MIR904b
(4 sentences)

Sequence

151930 reads, 6711.0 reads per million, 10 experiments

cuuuggagcgaugugugucaugauggcgguauuuugugaugcuaauacggUCUUGUCAAUGUUUAGGGGCAaaggugcaacuaugcaacaucccuggugcgagcucuugaucgcguaaguguugcuagugcccuccaCCCCUAAAUGUUGGCAAGACCUaauuggcgcacaacauugggaccgacgcuggaucagcagaagucaaaagacacaauuguga
.......(((((.((((((.((((..((((((.(((((.(((((((..(((((((((((((((((((((...(((.(((.(((.((((((...((..(((((........)))))..)))))))))))))))))...)))))))))))))))))))))..)))))))))))).))....))))..((((...))))....))))...)))))))))))..

Structure

cuuugga     g      --a    ---------------gg    ----  u     a       ac                     CAa   u   a   u      ucc  gg     gcu 
       gcgau uguguc   ugau                 cggu    au uugug ugcuaau  ggUCUUGUCAAUGUUUAGGGG   agg gca cua gcaaca   cu  ugcga   c
       ||||| ||||||   ||||                 ||||    || ||||| |||||||  |||||||||||||||||||||   ||| ||| ||| ||||||   ||  |||||    
       uguua acacag   acug                 gcca    ua aacac gcgguua  CCAGAACGGUUGUAAAUCCCC   ucc cgu gau cguugu   ga  gcgcu   u
-----ag     -      aaa    aagacgacuaggucgca    gggu  c     -       aU                     acc   -   -   -      ---  au     agu 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr22: 2033169-2033388 [+]

Mature ppt-miR904b-5p

• Accession: MIMAT0004380
• Description: Physcomitrella patens ppt-miR904b-5p mature miRNA
• Sequence: 51 - UCUUGUCAAUGUUUAGGGGCA - 71
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR904b-3p

• Accession: MIMAT0053680
• Description: Physcomitrella patens ppt-miR904b-3p mature miRNA
• Sequence: 138 - CCCCUAAAUGUUGGCAAGACCU - 159
• Evidence: experimental ; unknown

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769