Accession
MI0005694
Description
Physcomitrella patens
ppt-MIR898b precursor miRNA
Sequence
57392
reads,
2450.0
reads per million, 10 experiments
uacugcagaacuuaguuacagauucaucugcuuuguucauuuccggcaucUUGCUGUGCACUACUUAGUACgcgcguaguugcaggcauuccgggugcagcaacugacgcggaagacuuuucccagagugugcgcuucaacuggcgUGCUGAGUAGUGCACAGCAAUAUgcugggcauggacagcuaccaccgcugaguucgcuguauagaacguuugcu
(((.((.(((((((((..((((....))))..((((((((.((((((((.(((((((((((((((((((((((((((((((((..(((((...))))).)))))).))))((((.....))))((((((....)))....)))))))))))))))))))))))))).)))))))).))))))))........))))))))))).))).............
(((.((.(((((((((..((((....))))..((((((((.((((((((.(((((((((((((((((((((((((((((((((..(((((...))))).)))))).))))((((.....))))((((((....)))....)))))))))))))))))))))))))).)))))))).))))))))........))))))))))).))).............
Structure
------------- u a uacagauucaucugcu u c --------------------------------- - ag c
uac gc gaacuuagu uuguucau uccggcau UUGCUGUGCACUACUUAGUACgc gcgu aguugc gcauu
||| || ||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||| ||||| c
aug cg cuugagucg gacaggua gggucgUA AACGACACGUGAUGAGUCGUgcg cgca ucaacg cgugg
ucguuugcaagau u - --------ccaccauc c U gucaacuucgcgugugagacccuuuucagaagg g -a g
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
Chr14: 2423834-2424053 [+]
Database links
Mature ppt-miR898b-5p
| Accession | MIMAT0004381 |
| Description | Physcomitrella patens ppt-miR898b-5p mature miRNA |
| Sequence | 51 - UUGCUGUGCACUACUUAGUAC - 71 |
| Evidence |
experimental
cloned [1], 454 [2] |
Mature ppt-miR898b-3p
| Accession | MIMAT0053681 |
| Description | Physcomitrella patens ppt-miR898b-3p mature miRNA |
| Sequence | 147 - UGCUGAGUAGUGCACAGCAAUAU - 169 |
| Evidence |
experimental
unknown |
References
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