Stem-loop ppt-MIR898b

Accession

MI0005694

Description

Physcomitrella patens ppt-MIR898b precursor miRNA

Sequence

uacugcagaacuuaguuacagauucaucugcuuuguucauuuccggcaucUUGCUGUGCACUACUUAGUACgcgcguaguugcaggcauuccgggugcagcaacugacgcggaagacuuuucccagagugugcgcuucaacuggcgugcugaguagugcacagcaauaugcugggcauggacagcuaccaccgcugaguucgcuguauagaacguuugcu
(((.((.(((((((((..((((....))))..((((((((.((((((((.(((((((((((((((((((((((((((((((((..(((((...))))).)))))).))))((((.....))))((((((....)))....)))))))))))))))))))))))))).)))))))).))))))))........))))))))))).))).............

Structure

-------------   u  a         uacagauucaucugcu        u        c                       ---------------------------------    -      ag     c 
             uac gc gaacuuagu                uuguucau uccggcau UUGCUGUGCACUACUUAGUACgc                                 gcgu aguugc  gcauu  
             ||| || |||||||||                |||||||| |||||||| |||||||||||||||||||||||                                 |||| ||||||  ||||| c
             aug cg cuugagucg                gacaggua gggucgua aacgacacgugaugagucgugcg                                 cgca ucaacg  cgugg  
ucguuugcaagau   u  -         --------ccaccauc        c        u                       gucaacuucgcgugugagacccuuuucagaagg    g      -a     g 

Annotation confidence Not enough data

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

Chr14: 2423834-2424053 [+]

Mature ppt-miR898b

• Accession: MIMAT0004381
• Description: Physcomitrella patens ppt-miR898b mature miRNA
• Sequence: 51 - UUGCUGUGCACUACUUAGUAC - 71
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769