Accession
MI0005696
Description
Physcomitrella patens
ppt-MIR156b precursor miRNA
Literature search
5 open access papers mention ppt-MIR156b
(10 sentences)
(10 sentences)
Sequence
2013197
reads,
86521.0
reads per million, 10 experiments
gugaggcucgagugcagacacuauucaagugugggcggggggagcgggagUGACAGAAGAGAGUGAGCACgguugcgccuguacgaggauaacguacuugcucaaguguGCUCACUCUCUUCAUGUCGCGccucucccucgucguugugacgucauuugugaugagaggguggggaggggggugugugagggaggaggaggggaggugaaggguguggug
.....((((...(((..(((((.....)))))..)))....))))....((((((((((((((((((((((.(((.((..(((((.......)))))..)).))).)))))))))))))))).))))))(((((.(((((.((.((.(.(((.(((((.(.................).))))))))..).)).)).)))))))))).............
.....((((...(((..(((((.....)))))..)))....))))....((((((((((((((((((((((.(((.((..(((((.......)))))..)).))).)))))))))))))))).))))))(((((.(((((.((.((.(.(((.(((((.(.................).))))))))..).)).)).)))))))))).............
Structure
------------------------------------------gugaggcucgagugcagacacuauucaagugugggcggggggagcggga - g c cu ag
gUGACA GAAGAGAGUGAGCACg uug gc guacg g
|||||| |||||||||||||||| ||| || ||||| a
CGCUGU CUUCUCUCACUCGugu aac cg caugc u
guggugugggaaguggaggggaggaggagggaguguguggggggaggggugggagaguaguguuuacugcaguguugcugcucccucuccG A g u uu aa
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr21: 9338002-9338221 [-]
Database links
Mature ppt-miR156b-5p
| Accession | MIMAT0004384 |
| Description | Physcomitrella patens ppt-miR156b-5p mature miRNA |
| Sequence | 51 - UGACAGAAGAGAGUGAGCAC - 70 |
| Evidence |
experimental
cloned [1], 454 [2] |
Mature ppt-miR156b-3p
| Accession | MIMAT0053682 |
| Description | Physcomitrella patens ppt-miR156b-3p mature miRNA |
| Sequence | 110 - GCUCACUCUCUUCAUGUCGCG - 130 |
| Evidence |
experimental
unknown |
References
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