Stem-loop ppt-MIR156b

Accession

MI0005696

Description

Physcomitrella patens ppt-MIR156b precursor miRNA

Literature search

5 open access papers mention ppt-MIR156b
(10 sentences)

Sequence

gugaggcucgagugcagacacuauucaagugugggcggggggagcgggagUGACAGAAGAGAGUGAGCACgguugcgccuguacgaggauaacguacuugcucaagugugcucacucucuucaugucgcgccucucccucgucguugugacgucauuugugaugagaggguggggaggggggugugugagggaggaggaggggaggugaaggguguggug
.....((((...(((..(((((.....)))))..)))....))))....((((((((((((((((((((((.(((.((..(((((.......)))))..)).))).)))))))))))))))).))))))(((((.(((((.((.((.(.(((.(((((.(.................).))))))))..).)).)).)))))))))).............

Structure

------------------------------------------gugaggcucgagugcagacacuauucaagugugggcggggggagcggga      -                g   c  cu     ag 
                                                                                           gUGACA GAAGAGAGUGAGCACg uug gc  guacg  g
                                                                                           |||||| |||||||||||||||| ||| ||  |||||  a
                                                                                           cgcugu cuucucucacucgugu aac cg  caugc  u
guggugugggaaguggaggggaggaggagggaguguguggggggaggggugggagaguaguguuuacugcaguguugcugcucccucuccg      a                g   u  uu     aa 

Annotation confidence Not enough data

Genome context

Chr21: 9338002-9338221 [-]

Mature ppt-miR156b

• Accession: MIMAT0004384
• Description: Physcomitrella patens ppt-miR156b mature miRNA
• Sequence: 51 - UGACAGAAGAGAGUGAGCAC - 70
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769