miRBase entry: pta-MIR156b

Stem-loop pta-MIR156b


Accession
MI0005777
Description
Pinus taeda pta-MIR156b precursor miRNA


Sequence

gaugaCAGAAGAUAGAGAGCACAACcgcucagaugccggcacucugcguuugagguguaugugcucucguugauuuugucauc
((((((((((....(((((((((((..(((((((((.(.....).)))))))))..)).))))))))).....))))))))))

Structure
          -GAUA         -  cg         c g 
gaugaCAGAA     GAGAGCACA AC  cucagaugc g c
||||||||||     ||||||||| ||  ||||||||| | a
cuacuguuuu     cucucgugu ug  gaguuugcg c c
          aguug         a  ug         u u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR156b

Accession MIMAT0004989
Description Pinus taeda pta-miR156b mature miRNA
Sequence 6 - CAGAAGAUAGAGAGCACAAC - 25
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098