Stem-loop pta-MIR159b

Accession

MI0005779

Description

Pinus taeda pta-MIR159b precursor miRNA

Gene family

MIPF0000010; MIR159

Sequence

uuacggggagcuuucuucaguccaacgaaaggccguauagggaugauucaacugcugguucauggacucuacuaucuuguaauccucgagguucaguauuggcggcaagauaauggugugcaugacacgggagucguauugccacuacgcuguuuuuacUUGGAUUGAAGAGAGCUCCCagaaa
.....((((((((((((((((((((..((((((.((.(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..)))))))).))).)).)))))..))).))).).)))))).))).)).))))))..)))))))))))))))))))).....

Structure

uuacg                    cg      c  a   -  a    u a   g   gu     g  u   c        aau  ucgagg 
     gggagcuuucuucaguccaa  aaaggc gu uag gg ugau c acu cug  ucaug ac cua uaucuugu   cc      u
     ||||||||||||||||||||  |||||| || ||| || |||| | ||| |||  ||||| || ||| ||||||||   ||      u
     CCCUCGAGAGAAGUUAGGUU  uuuuug cg auc cc guua g uga ggc  aguac ug ggu auagaacg   gg      c
aaaga                    ca      u  c   a  -    u c   g   ac     g  u   a        -gc  uuauga 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR159b

• Accession: MIMAT0004991
• Description: Pinus taeda pta-miR159b mature miRNA
• Sequence: 160 - UUGGAUUGAAGAGAGCUCCC - 179
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098