Stem-loop pta-MIR166b

Accession

MI0005783

Description

Pinus taeda pta-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

ggcagaguuggggugaggggacugcagccuggcacgagaccugaaaacuuuucugacaagcagccgggcgggcagagucacgcauggugUCGGACCAGGCUUCAUUCCCCucacaacacucuucc
((.(((((.(..(((((((((.((.(((((((..(((.(((((.......(((((.(..((......))..)))))).....)).))).)))..))))))).)).)))))))))..)))))).))

Structure

  c     u gg         c  c       ca   g   -  aaaacuu     a aa  ag 
gg agagu g  gugagggga ug agccugg  cga acc ug       uucug c  gc  c
|| ||||| |  ||||||||| || |||||||  ||| ||| ||       ||||| |  ||   
cc ucuca c  cacuCCCCU AC UCGGACC  GCU ugg ac       gagac g  cg  c
  u     - aa         U  U       AG   g   u  --gcacu     - gg  gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR166b

• Accession: MIMAT0004994
• Description: Pinus taeda pta-miR166b mature miRNA
• Sequence: 90 - UCGGACCAGGCUUCAUUCCCC - 110
• Evidence: not_experimental

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098