Stem-loop pta-MIR319

Accession

MI0005786

Description

Pinus taeda pta-MIR319 precursor miRNA

Sequence

gauaaguggagcucccuucaauccaagaaaugcguguuuagugacaguacaucuccugcgucaugcacaccacuauccugucaugcaggucgauugauugauuuguucaggcugcuggagagucacggacagggaaguagaaugcaugaaucagcagcugaaccaccgcugcacaagcuuuggUUGGACUGAAGGGAGCUCCaaca
......((((((((((((((.(((((..((.((.(((.(((((...((.((.((.(((..(((((((..(.(((.(((((((..(((((((((....)))))))))...((((.......))))...))))))).))).)..)))))))..))).)).)).))...))))).))).)).))..))))).))))))))))))))...

Structure

gauaag              a     ga  u  g   u     aca  a  u  c   cg       ca c   a       -------------------au         u 
      uggagcucccuuca uccaa  aa gc ugu uagug   gu ca cu cug  ucaugca  c acu uccuguc                     gcaggucga u
      |||||||||||||| |||||  || || ||| |||||   || || || |||  |||||||  | ||| |||||||                     |||||||||  
      aCCUCGAGGGAAGU AGGUU  uu cg aca gucgc   ca gu ga gac  aguacgu  g uga gggacag                     uguuuaguu g
---aca              C     gg  u  a   c     cac  a  c  c   ua       aa a   a       gcacugagaggucgucggacu         a 

Annotation confidence Not enough data

Comments

The cloned miR319 sequence in [1] has a 5' terminal G residue, which is incompatible with the genome sequence and the hairpin shown here.

Genome context

Unknown

Mature pta-miR319

• Accession: MIMAT0004997
• Description: Pinus taeda pta-miR319 mature miRNA
• Sequence: 184 - UUGGACUGAAGGGAGCUCC - 202
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098