Accession
MI0005786
Description
Pinus taeda
pta-MIR319 precursor miRNA
Sequence
gauaaguggagcucccuucaauccaagaaaugcguguuuagugacaguacaucuccugcgucaugcacaccacuauccugucaugcaggucgauugauugauuuguucaggcugcuggagagucacggacagggaaguagaaugcaugaaucagcagcugaaccaccgcugcacaagcuuuggUUGGACUGAAGGGAGCUCCaaca
......((((((((((((((.(((((..((.((.(((.(((((...((.((.((.(((..(((((((..(.(((.(((((((..(((((((((....)))))))))...((((.......))))...))))))).))).)..)))))))..))).)).)).))...))))).))).)).))..))))).))))))))))))))...
......((((((((((((((.(((((..((.((.(((.(((((...((.((.((.(((..(((((((..(.(((.(((((((..(((((((((....)))))))))...((((.......))))...))))))).))).)..)))))))..))).)).)).))...))))).))).)).))..))))).))))))))))))))...
Structure
gauaag a ga u g u aca a u c cg ca c a -------------------au u
uggagcucccuuca uccaa aa gc ugu uagug gu ca cu cug ucaugca c acu uccuguc gcaggucga u
|||||||||||||| ||||| || || ||| ||||| || || || ||| ||||||| | ||| ||||||| |||||||||
aCCUCGAGGGAAGU AGGUU uu cg aca gucgc ca gu ga gac aguacgu g uga gggacag uguuuaguu g
---aca C gg u a c cac a c c ua aa a a gcacugagaggucgucggacu a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The cloned miR319 sequence in [1] has a 5' terminal G residue, which is incompatible with the genome sequence and the hairpin shown here.
Genome context
Unknown
Database links
Mature pta-miR319
| Accession | MIMAT0004997 |
| Description | Pinus taeda pta-miR319 mature miRNA |
| Sequence | 184 - UUGGACUGAAGGGAGCUCC - 202 |
| Evidence |
experimental
cloned [1] |
References
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