Stem-loop pta-MIR396

Accession

MI0005788

Description

Pinus taeda pta-MIR396 precursor miRNA

Sequence

gaaucuugucauacuuUUCCACAGCUUUCUUGAACUUuacguguacgggacgaggagauucugauuucuacgucugcgauuaaaguucaagaaaacugugggaaagcaugguaggauuc
((((((((((((.(((((((((((.(((((((((((((((((.....(((((.((((((....)))))).))))))))..)))))))))))))).))))))))))).))))))))))))

Structure

            a           C              --   guacg     a      u 
gaaucuugucau cuuUUCCACAG UUUCUUGAACUUua  cgu     ggacg ggagau c
|||||||||||| ||||||||||| ||||||||||||||  |||     ||||| ||||||  
cuuaggauggua gaaaggguguc aaagaacuugaaau  gcg     ucugc ucuuua u
            c           a              ua   -----     a      g 

Annotation confidence Low

Genome context

Unknown

Mature pta-miR396

• Accession: MIMAT0004999
• Description: Pinus taeda pta-miR396 mature miRNA
• Sequence: 17 - UUCCACAGCUUUCUUGAACUU - 37
• Evidence: not_experimental

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098