miRBase entry: pta-MIR482a

Stem-loop pta-MIR482a


Accession
MI0005791
Description
Pinus taeda pta-MIR482a precursor miRNA


Sequence

gagguguggaaggauaggguaagacuaagguuaaggagaaacucugcuucauuaauucucugcuccagUCUUCCCUACUCCUCCCAUUCCuu
((((.((((.(((((((((.((((((..((....((((((...............))))))...))))))))))))).)))).)))).))))

Structure
    u    a    -     u      aa  uuaa      acucug 
gagg gugg agga uaggg aagacu  gg    ggagaa      c
|||| |||| |||| ||||| ||||||  ||    ||||||      u
uuCC UACC UCCU AUCCC UUCUga  cc    ucucuu      u
    U    C    C     -      --  -ucg      aauuac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR482a

Accession MIMAT0005002
Description Pinus taeda pta-miR482a mature miRNA
Sequence 69 - UCUUCCCUACUCCUCCCAUUCC - 90
Evidence not_experimental

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098