Stem-loop pta-MIR947

Accession

MI0005796

Description

Pinus taeda pta-MIR947 precursor miRNA

Sequence

acgccuaaggcgcagcagcagauucugauagaagacucaggcaaagcauuuguuguuggcagguugaaugcuuucggcagaaccaccaauaacaaggggggcgccuggugucuugCAUCGGAAUCUGUUACUGUUUCcuaggcgu
(((((((.((.((((.(((((((((((((..(((((((((((......(((((((((((..((((...((((...)))).)))).)))))))))))......)))))).)))))..))))))))))))).))))..)))))))))

Structure

       a  -c    c             ag     -      aaagca           ca    gaa    u 
acgccua gg  gcag agcagauucugau  aagac ucaggc      uuuguuguugg  gguu   ugcu  
||||||| ||  |||| |||||||||||||  ||||| ||||||      |||||||||||  ||||   |||| u
ugcggau cC  UGUC UUGUCUAAGGCUA  uucug gguccg      gaacaauaacc  ccaa   acgg  
       -  UU    A             Cg     u      cggggg           -a    --g    c 

Annotation confidence Low

Genome context

Unknown

Mature pta-miR947

• Accession: MIMAT0005007
• Description: Pinus taeda pta-miR947 mature miRNA
• Sequence: 116 - CAUCGGAAUCUGUUACUGUUUC - 137
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098