Stem-loop dme-mir-955

Accession

MI0005807

Description

Drosophila melanogaster dme-mir-955 precursor miRNA mir-955

Gene
family

RF03835; mir-955

Sequence

739 reads, 21 reads per million, 39 experiments

ggccagcuaaucaacucCAUCGUGCAGAGGUUUGAGUGUCcuguguuuugccuaaucgCAUUCAAUUUCUGAACGGUAGAgaugguacgcuuagaaa
....(((..((((.(((.(((((.((((((((.((((((..................)))))))))))))).))))).))).))))..)))......

Structure

--ggcc   ua    a   C     G        U      Ccuguguu 
      agc  auca cuc AUCGU CAGAGGUU GAGUGU        u
      |||  |||| ||| ||||| |||||||| ||||||         
      ucg  uggu gAG UGGCA GUCUUUAA CUUACg        u
aaagau   ca    a   A     A        -      cuaauccg 

Annotation confidence Not enough data

Genome context

chr3L: 3299055-3299151 [+]

Mature dme-miR-955-5p

• Accession: MIMAT0005466
• Description: Drosophila melanogaster dme-miR-955-5p mature miRNA
• Sequence: 18 - CAUCGUGCAGAGGUUUGAGUGUC - 40
• Evidence: experimental ; 454 [1]

Mature dme-miR-955-3p

• Accession: MIMAT0020847
• Description: Drosophila melanogaster dme-miR-955-3p mature miRNA
• Sequence: 59 - CAUUCAAUUUCUGAACGGUAGA - 80
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864