Stem-loop dme-mir-961

Accession

MI0005816

Description

Drosophila melanogaster dme-mir-961 precursor miRNA mir-961

Gene
family

RF03850; mir-961

Literature search

1 open access papers mention dme-mir-961
(1 sentences)

Sequence

341 reads, 26 reads per million, 37 experiments

ucaagggccgaguuaccUUUGAUCACCAGUAACUGAGAUuguuucugauacgguUUCGUUUUCUGGCAAUCAAAAGaacuuggacucga
....((((((((((.(.((((((..((((.(((.((((((((.......)))))))))))..))))..)))))).)))))))).)))..

Structure

ucaa   -       a c      CA    -U   U        uu 
    ggg ccgaguu c UUUGAU  CCAG  AAC GAGAUugu  c
    ||| ||||||| | ||||||  ||||  ||| ||||||||  u
    cuc gguucaa G AAACUA  GGUC  UUG CUUuggca  g
--ag   a       - A      AC    UU   -        ua 

Annotation confidence High

Genome context

chr2L: 5641191-5641279 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from dme-mir-961

Mature dme-miR-961-5p

• Accession: MIMAT0005475
• Description: Drosophila melanogaster dme-miR-961-5p mature miRNA
• Sequence: 18 - UUUGAUCACCAGUAACUGAGAU - 39
• Evidence: experimental ; 454 [1]

Mature dme-miR-961-3p

• Accession: MIMAT0020856
• Description: Drosophila melanogaster dme-miR-961-3p mature miRNA
• Sequence: 55 - UUCGUUUUCUGGCAAUCAAAAG - 76
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864