Stem-loop dme-mir-965

Accession

MI0005821

Description

Drosophila melanogaster dme-mir-965 precursor miRNA mir-965

Gene
family

RF02520; mir-965

Literature search

3 open access papers mention dme-mir-965
(4 sentences)

Sequence

32497 reads, 805 reads per million, 49 experiments

gacaauauugcucaacauuuuggGGGGUAAAACUGUACGUUAUAUGugcccuucugugauauucaUAAGCGUAUAGCUUUUCCCCUUaaaaguuagagcuauugcaa
(.(((((..(((((((.((((((((((.(((((((((((((.((((.................))))))))))))).))))))))))))))))).))))))))))..

Structure

-- a     uu    -   a          U    -         A    ugcccuu 
  g caaua  gcuc aac uuuuggGGGG AAAA CUGUACGUU UAUG       c
  | |||||  |||| ||| |||||||||| |||| ||||||||| ||||       u
  c guuau  cgag uug aaaaUUCCCC UUUU GAUAUGCGA AUac       g
aa -     --    a   -          -    C         -    uuauagu 

Annotation confidence Medium

Genome context

chr2L: 243035-243141 [-]

Mature dme-miR-965-3p

• Accession: MIMAT0005480
• Description: Drosophila melanogaster dme-miR-965-3p mature miRNA
• Sequence: 66 - UAAGCGUAUAGCUUUUCCCCUU - 87
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-965-5p

• Accession: MIMAT0020861
• Description: Drosophila melanogaster dme-miR-965-5p mature miRNA
• Sequence: 24 - GGGGUAAAACUGUACGUUAUAUG - 46
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879