Stem-loop dme-mir-975

Accession

MI0005832

Description

Drosophila melanogaster dme-mir-975 precursor miRNA mir-975

Gene
family

RF03367; mir-975

Literature search

3 open access papers mention dme-mir-975
(8 sentences)

Sequence

812 reads, 203 reads per million, 18 experiments

uugaauuuuugauuuUAAACACUUCCUACAUCCUGUAUguguuuugcauccgguACAGAUGUGGGAGUCGUUUGCAcucagagauuucaca
..((((((((((...((((((((.((((((((.(((((((((...))))...)))))))))))))))).)))))...))))))))))....

Structure

--uu          uuu     -   U        C     ---    u 
    gaauuuuuga   UAAAC ACU CCUACAUC UGUAU   gugu  
    ||||||||||   ||||| ||| |||||||| |||||   |||| u
    uuuagagacu   GUUUG UGA GGGUGUAG ACAug   uacg  
acac          cAC     C   -        -     gcc    u 

Annotation confidence High

Genome context

chrX: 19558753-19558843 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dme-mir-975

Mature dme-miR-975-5p

• Accession: MIMAT0005491
• Description: Drosophila melanogaster dme-miR-975-5p mature miRNA
• Sequence: 16 - UAAACACUUCCUACAUCCUGUAU - 38
• Evidence: experimental ; 454 [1]

Mature dme-miR-975-3p

• Accession: MIMAT0020872
• Description: Drosophila melanogaster dme-miR-975-3p mature miRNA
• Sequence: 55 - ACAGAUGUGGGAGUCGUUUGCA - 76
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864