Stem-loop dme-mir-989

Accession

MI0005848

Description

Drosophila melanogaster dme-mir-989 precursor miRNA mir-989

Gene
family

RF03319; mir-989

Literature search

8 open access papers mention dme-mir-989
(114 sentences)

Sequence

2529127 reads, 12711 reads per million, 46 experiments

aaagauuuugggaaucGGCCACUACCUUGCAGUCACGUGaugaaaagacacaggugacacugauccggauuugguaguugacaaauccuccaugccgagauuaguuucauuuugcgucuuuugaauucgaauaguucaUGUGAUGUGACGUAGUGGAACauaccugaaauuaca
...(((((((((......(((((((.(((((.(((((((((.(((((((.(((((((.((((((((((.(.(((..(.........)..))).)))).))))))).))).)))).))))))).)...........))))))))))))).)))))))......)))))))))...

Structure

aaa         aaucGG       C     G        ----------- g       a    -   c       -   a u   ua uug 
   gauuuuggg      CCACUAC UUGCA UCACGUGa           u aaaagac cagg uga acugauc cgg u ugg  g   a
   |||||||||      ||||||| ||||| ||||||||           | ||||||| |||| ||| ||||||| ||| | |||  |   c
   uuaaagucc      GGUGAUG AGUGU AGUGUacu           a uuuucug guuu acu ugauuag gcc g acc  c   a
aca         auaCAA       C     -        ugauaagcuua g       c    u   u       a   - u   uc uaa 

Annotation confidence Medium

Genome context

chr2R: 14145351-14145524 [-]

Mature dme-miR-989-3p

• Accession: MIMAT0005506
• Description: Drosophila melanogaster dme-miR-989-3p mature miRNA
• Sequence: 139 - UGUGAUGUGACGUAGUGGAAC - 159
• Evidence: experimental ; 454 [1]

Mature dme-miR-989-5p

• Accession: MIMAT0020887
• Description: Drosophila melanogaster dme-miR-989-5p mature miRNA
• Sequence: 17 - GGCCACUACCUUGCAGUCACGUG - 39
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864