Stem-loop dme-mir-1000

Accession

MI0005862

Description

Drosophila melanogaster dme-mir-1000 precursor miRNA mir-1000

Gene
family

RF03299; mir-1000

Literature search

4 open access papers mention dme-mir-1000
(5 sentences)

Sequence

30954 reads, 727 reads per million, 46 experiments

gacgcuugccauugAUAUUGUCCUGUCACAGCAGUauuguaacacuauauuauaguuuaCUGCUGGGUCGGGGCAUUAACAuuguugagcgucauuagca
((((((((.((.((.((.(((((((.(.((((((((((((((.......)))))))..))))))).).))))))).)).)).)).)))))))).......

Structure

-------        c  u  A  U       U A       --       ca 
       gacgcuug ca ug UA UGUCCUG C CAGCAGU  auuguaa  c
       |||||||| || || || ||||||| | |||||||  |||||||  u
       cugcgagu gu AC AU ACGGGGC G GUCGUCa  ugauauu  a
acgauua        u  u  A  U       U G       uu       au 

Annotation confidence High

Genome context

chr3R: 25588859-25588958 [-]

Mature dme-miR-1000-5p

• Accession: MIMAT0005520
• Description: Drosophila melanogaster dme-miR-1000-5p mature miRNA
• Sequence: 15 - AUAUUGUCCUGUCACAGCAGU - 35
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-1000-3p

• Accession: MIMAT0020900
• Description: Drosophila melanogaster dme-miR-1000-3p mature miRNA
• Sequence: 60 - CUGCUGGGUCGGGGCAUUAACA - 81
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879