Stem-loop cel-mir-1020

Accession

MI0005881

Description

Caenorhabditis elegans cel-mir-1020 precursor miRNA

Sequence

1476 reads, 18 reads per million, 12 experiments

GUAAGUGUUACAGAAUAAUCUUagacaaaacaacuaaaauuaaugaaaaAUUAUUCUGUGACACUUUCAG
(.(((((((((((((((((.(((....................)))...))))))))))))))))).)..

Structure

-- U                 --C   gacaaaaca 
  G AAGUGUUACAGAAUAAU   UUa         a
  | |||||||||||||||||   |||          
  C UUCACAGUGUCUUAUUA   agu         c
GA U                 aaa   aauuaaaau 

Annotation confidence Medium

Genome context

chrIII: 10047746-10047815 [-]

Mature cel-miR-1020-3p

• Accession: MIMAT0005033
• Description: Caenorhabditis elegans cel-miR-1020-3p mature miRNA
• Sequence: 50 - AUUAUUCUGUGACACUUUCAG - 70
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-1020-5p

• Accession: MIMAT0020356
• Description: Caenorhabditis elegans cel-miR-1020-5p mature miRNA
• Sequence: 1 - GUAAGUGUUACAGAAUAAUCUU - 22
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 17589500
   Intronic microRNA precursors that bypass Drosha processing
   "Ruby JG, Jan CH, Bartel DP"
   "Nature (2007) 448:83-86


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577