Stem-loop mdv2-mir-M19

Accession

MI0005887

Description

Mareks disease virus type 2 mdv2-mir-M19 precursor miRNA

Sequence

cguguccCCCCUCGGCGGUGUGCACGGgaguaucgggcgccguccuCAUGCCCCCCUCCGAGGGUAGCacg
(((((...(((((((.((.......(((.((((.((((...))))..))))))))).)))))))..)))))

Structure

     ccC       C  UGUGCAC   a    -c    g 
cgugu   CCCUCGG GG       GGg guau  gggc  
|||||   ||||||| ||       ||| ||||  |||| c
gcaCG   GGGAGCC CC       CCC CGUA  ccug  
     -AU       U  -------   -    Cu    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdv2-miR-M19-5p

• Accession: MIMAT0012541
• Description: Mareks disease virus type 2 mdv2-miR-M19-5p mature miRNA
• Sequence: 8 - CCCCUCGGCGGUGUGCACGG - 27
• Evidence: experimental ; Illumina [2]

Mature mdv2-miR-M19-3p

• Accession: MIMAT0004460
• Description: Mareks disease virus type 2 mdv2-miR-M19-3p mature miRNA
• Sequence: 47 - CAUGCCCCCCUCCGAGGGUAGC - 68
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17459919
   Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
   "J Virol (2007) 81:7164-7170


2. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136