Stem-loop mdv2-mir-M20

Accession

MI0005888

Description

Mareks disease virus type 2 mdv2-mir-M20 precursor miRNA

Sequence

uccgUCCUUAGCGUGGUGCCUGAGAuuuuaacacguaucgucUCAAGUACUGCGCGCAAGGACCGa
((.((((((.(((((((((.((((((..((.....))..)))))).)))))))))..)))))).))

Structure

  c      -A         C      uu  a 
uc gUCCUU  GCGUGGUGC UGAGAu  ua c
|| ||||||  ||||||||| ||||||  || a
aG CAGGAA  CGCGUCAUG ACUcug  au c
  C      CG         A      cu  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdv2-miR-M20-5p

• Accession: MIMAT0004461
• Description: Mareks disease virus type 2 mdv2-miR-M20-5p mature miRNA
• Sequence: 5 - UCCUUAGCGUGGUGCCUGAGA - 25
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdv2-miR-M20-3p

• Accession: MIMAT0004462
• Description: Mareks disease virus type 2 mdv2-miR-M20-3p mature miRNA
• Sequence: 43 - UCAAGUACUGCGCGCAAGGACCG - 65
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17459919
   Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
   "J Virol (2007) 81:7164-7170


2. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136