Stem-loop mdv2-mir-M21

Accession

MI0005889

Description

Mareks disease virus type 2 mdv2-mir-M21 precursor miRNA

Sequence

cgcuUCCUCCUUCGCGGGGUGCUUGAgaucaccgaaugacgggaucGAGCACCACGCCGAUGGACGGAGAuggcg
((((((((((.(((((.(((((((..((((.(((.....)))))))))))))).)).))).))).)))...))))

Structure

    ---   -   U   -  G       GA    a   a 
cgcu   UCC UCC UCG CG GGUGCUU  gauc ccg a
||||   ||| ||| ||| || |||||||  |||| ||| u
gcgg   AGG AGG AGC GC CCACGAG  cuag ggc g
    uAG   C   U   C  A       --    -   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdv2-miR-M21-5p

• Accession: MIMAT0004463
• Description: Mareks disease virus type 2 mdv2-miR-M21-5p mature miRNA
• Sequence: 5 - UCCUCCUUCGCGGGGUGCUUGA - 26
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdv2-miR-M21-3p

• Accession: MIMAT0004464
• Description: Mareks disease virus type 2 mdv2-miR-M21-3p mature miRNA
• Sequence: 47 - GAGCACCACGCCGAUGGACGGAGA - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17459919
   Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
   "J Virol (2007) 81:7164-7170


2. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136