Stem-loop mdv2-mir-M22

Accession

MI0005890

Description

Mareks disease virus type 2 mdv2-mir-M22 precursor miRNA

Sequence

cugggccgUCUUACACGCACGUCACUCUGGUcguaucgguaguccuAGUGGCUUGCUUGUAGGCUGUcc
..((((.((((.(((.(((.((((((..((.(.........).)).)))))).))).))))))).))))

Structure

cu    c    U   C   C      CU  U gua 
  gggc gUCU ACA GCA GUCACU  GG c   u
  |||| |||| ||| ||| ||||||  || |   c
  ccUG CGGA UGU CGU CGGUGA  cc g   g
--    U    -   U   U      -u  u aug 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdv2-miR-M22-5p

• Accession: MIMAT0004465
• Description: Mareks disease virus type 2 mdv2-miR-M22-5p mature miRNA
• Sequence: 9 - UCUUACACGCACGUCACUCUGGU - 31
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdv2-miR-M22-3p

• Accession: MIMAT0004466
• Description: Mareks disease virus type 2 mdv2-miR-M22-3p mature miRNA
• Sequence: 47 - AGUGGCUUGCUUGUAGGCUGU - 67
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17459919
   Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
   "J Virol (2007) 81:7164-7170


2. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136