Stem-loop mdv2-mir-M23

Accession

MI0005891

Description

Mareks disease virus type 2 mdv2-mir-M23 precursor miRNA

Sequence

uucggAUGGUCCGUGGUACGGUGUCCUguguugugugagagGUCUCCGUACACCGGACCAUCGaa
....(((((((((..((((((.(.(((.(........).))).).))))))..)))))))))...

Structure

uucg         UG      U U   g guu 
    gAUGGUCCG  GUACGG G CCU u   g
    |||||||||  |||||| | ||| |    
    CUACCAGGC  CAUGCC C Gga a   u
-aaG         CA      U U   g gug 

Annotation confidence Low

Genome context

Unknown

Mature mdv2-miR-M23-5p

• Accession: MIMAT0004467
• Description: Mareks disease virus type 2 mdv2-miR-M23-5p mature miRNA
• Sequence: 6 - AUGGUCCGUGGUACGGUGUCCU - 27
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdv2-miR-M23-3p

• Accession: MIMAT0012542
• Description: Mareks disease virus type 2 mdv2-miR-M23-3p mature miRNA
• Sequence: 42 - GUCUCCGUACACCGGACCAUCG - 63
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17459919
   Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Sewer A, Zavolan M, Nair V"
   "J Virol (2007) 81:7164-7170


2. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136